COVID-19 Disease Map

Here we share resources and best practices to develop a COVID-19 disease map.
We aim to establish a knowledge repository on mechanisms of COVID-19 as a broad community-driven effort.
The COVID-19 disease map is an assembly of molecular interaction diagrams, established based on literature evidence.
We focus on host-pathogen interactions, specific to the SARS-CoV-2 virus.

Contributors

Please, use this form to let us know how you’d like to contribute to the development of the map.

A dedicated mailing list for development of the map can be found here.

We have a Slack channel focused on curation activities, contact marek.ostaszewski (at) uni.lu for access.

Curation

Curators can share their articles using a dedicated Zotero group COVID-19-map-curation.
The group is public-by-invitation to allow file sharing.

Check curation guidelines to harmonize your content for easier sharing and integration.
Curation TCs take place every Friday, at 1.30PM and 9PM, see curation guidelines for details.
Slides from the TCs are available here.

Content repositories

Resources and literature can be shared using a dedicated ownCloud folder (password: covid19). When sharing a paper, please put it into a folder that matches the category, or create a folder with your name.

Cureted diagrams and code can be shared using a dedicated public Gitlab repository.
Contact marek.ostaszewski (at) uni.lu for modification privileges.

FAIRDOMHub project space can be used to share literature, data and computational models.

WikiPathways can be shared using a dedicated collection with COVID-19 related pathways.

Useful resources

Relevant databases, literature and datasets can be found on the resources page

Curation resources:

Modeling efforts: